Arctic Cod (Boreogadus saida) as Prey: Fish Length-Energetics Relationships in the Beaufort Sea and Hudson Bay

Although Arctic cod (Boreogadus saida) is widely recognized as an important trophic link to top predators in Arctic marine ecosystems, the challenges of conducting fieldwork in the Arctic make this species difficult to study. We establish some basic relationships to improve prey energetics modeling when only in-field parameters (e.g., fork length) can be measured. We investigated the intraspecific relationships among energy density, fork length, mass, and water content for Arctic cod captured by Black Guillemots and Thick-billed Murres at two sites (Western Beaufort and Hudson Bay). Dry energy density was similar between sites (21.6 – 22.2 kJ g-1) and increased with fork length (Dry EDkJ/g = 0.028 (± 0.01) • Fork Lengthmm + 18.12 (± 1.33). Even though fish lost some water as they were transported to the nest by avian predators, wet energy density also increased with fork length. We suggest that environmental conditions had a similar effect on growth at these two locations although they occur in very different oceanographic regimes. Arctic cod, especially large cod, is one of the most energy-rich prey species in the Arctic. Our results highlight the importance of this valuable prey to Arctic ecosystems and the utility of using seabirds opportunistically as samplers of the marine environment.Même si la morue polaire (Boreogadus saida) est grandement reconnue comme un lien trophique important pour les prédateurs situés en bout de chaîne des écosystèmes marins de l’Arctique, cette espèce est difficile à étudier en raison des défis inhérents à la réalisation de travaux sur le terrain dans l’Arctique. Nous établissons des relations de base afin d’améliorer la modélisation de la valeur énergétique des proies lorsque seuls des paramètres sur le terrain (comme la longueur à la fourche) peuvent être mesurés. Nous avons étudié les relations intraspécifiques qui existent entre la densité d’énergie, la longueur à la fourche, la masse et la teneur en eau de la morue polaire capturée par le guillemot à miroir et le guillemot de Brünnich à deux sites (ouest de Beaufort et baie d’Hudson). La densité d’énergie sèche était semblable entre les sites (21,6 – 22,2 kJ g-1) et augmentait en fonction de la longueur à la fourche (DE sèche EDkJ/g = 0,028 (± 0,01) • longueur à la fourchemm + 18,12(± 1,33). Même si les poissons perdaient de l’eau pendant le transport jusqu’au nid par les oiseaux prédateurs, la densité d’énergie humide augmentait également en fonction de la longueur à la fourche. Nous suggérons que les conditions environnementales avaient un effet similaire sur la croissance à ces deux sites même s’ils se trouvent dans des régimes océanographiques très différents. La morue polaire, surtout celle de grande taille, est l’une des espèces proies les plus riches en énergie de l’Arctique. Nos résultats mettent en évidence l’importance de cette précieuse proie pour les écosystèmes de l’Arctique et l’utilité de se servir des oiseaux de mer de manière opportuniste en guise d’échantillonneurs de l’environnement marin

Timescales of spike-train correlation for neural oscillators with common drive

We examine the effect of the phase-resetting curve (PRC) on the transfer of correlated input signals into correlated output spikes in a class of neural models receiving noisy, super-threshold stimulation. We use linear response theory to approximate the spike correlation coefficient in terms of moments of the associated exit time problem, and contrast the results for Type I vs. Type II models and across the different timescales over which spike correlations can be assessed. We find that, on long timescales, Type I oscillators transfer correlations much more efficiently than Type II oscillators. On short timescales this trend reverses, with the relative efficiency switching at a timescale that depends on the mean and standard deviation of input currents. This switch occurs over timescales that could be exploited by downstream circuits

Correlation transfer in stochastically driven oscillators over long and short time scales

In the absence of synaptic coupling, two or more neural oscillators may become synchronized by virtue of the statistical correlations in their noisy input streams. Recent work has shown that the degree of correlation transfer from input currents to output spikes depends not only on intrinsic oscillator dynamics, but also depends on the length of the observation window over which the correlation is calculated. In this paper we use stochastic phase reduction and regular perturbations to derive the correlation of the total phase elapsed over long time scales, a quantity which provides a convenient proxy for the spike count correlation. Over short time scales, we derive the spike count correlation directly using straightforward probabilistic reasoning applied to the density of the phase difference. Our approximations show that output correlation scales with the autocorrelation of the phase resetting curve over long time scales. We also find a concise expression for the influence of the shape of the phase resetting curve on the initial slope of the output correlation over short time scales. These analytic results together with numerical simulations provide new intuitions for the recent counterintuitive finding that type I oscillators transfer correlations more faithfully than do type II over long time scales, while the reverse holds true for the better understood case of short time scales.Comment: 9 pages, 7 figures, submitted to Physical Review

Understanding surgical antimicrobial prescribing behaviour in the hospital setting: a systematic review and meta-ethnography protocol.

This is the final version. Available from BMC via the DOI in this record. Availability of data and materials: Not applicable.BACKGROUND: Surgical specialities use extensive amounts of antimicrobials, and misuse has been widely reported, making them a key target for antimicrobial stewardship initiatives. Interventions informed by, and tailored to, a clear understanding of the contextual barriers to appropriate antimicrobial use are more likely to successfully improve practice. However, this approach has been under utilised. Our aim is to synthesise qualitative studies on surgical antimicrobial prescribing behaviour (APB) in hospital settings to explain how and why contextual factors act and interact to influence APB amongst surgical teams. We will develop new theory to advance understanding and identify knowledge gaps to inform further research. METHODS: The meta-ethnography will follow the seven-phase method described by Noblit and Hare. We will conduct a comprehensive search using eight databases (AMED, CINAHL, EMBASE, MEDLINE, MEDLINE-in-process, Web of Science, Cochrane Library and PsycINFO) with no date restrictions; forwards and backwards citation searches; and contacting first authors of relevant papers. Studies will be dual screened and included if they use recognised qualitative methods and analysis; focus on contextual factors associated with surgical APB within hospital settings; are available in full in English; and are relevant to the research question. Any disagreements between reviewers will be resolved through discussion to reach consensus. Included studies will be read repeatedly to illuminate key concepts and the relationship between key concepts across studies. Then, key concepts will be sorted into conceptual categories or 'piles' which will be further abstracted to form a conceptual framework explaining surgical APB. During the synthesis, emerging interpretations will be discussed with stakeholders (including authors of included studies where possible; surgical and stewardship practitioners; and patient representatives) to ensure new knowledge is meaningful. DISCUSSION: This research has several strengths: (1) the protocol has been written with reference to established guidance maximising rigour and transparency; (2) the multi-disciplinary research team bring varied interpretative repertoires and relevant methodological skills; and (3) stakeholders will be involved to ensure that findings are relevant, and disseminated via suitable channels, to support improved patient care. SYSTEMATIC REVIEW REGISTRATION: PROSPERO CRD42020184343.Health Education England/National Institute for Health Researc

Performance of serum-supplemented and serum-free media in IFNγ Elispot Assays for human T cells

The choice of serum for supplementation of media for T cell assays and in particular, Elispot has been a major challenge for assay performance, standardization, optimization, and reproducibility. The Assay Working Group of the Cancer Vaccine Consortium (CVC-CRI) has recently identified the choice of serum to be the leading cause for variability and suboptimal performance in large international Elispot proficiency panels. Therefore, a serum task force was initiated to compare the performance of commercially available serum-free media to laboratories’ own medium/serum combinations. The objective of this project was to investigate whether a serum-free medium exists that performs as well as lab-own serum/media combinations with regard to antigen-specific responses and background reactivity in Elispot. In this way, a straightforward solution could be provided to address the serum challenge. Eleven laboratories tested peripheral blood mononuclear cells (PBMC) from four donors for their reactivity against two peptide pools, following their own Standard Operating Procedure (SOP). Each laboratory performed five simultaneous experiments with the same SOP, the only difference between the experiments was the medium used. The five media were lab-own serum-supplemented medium, AIM-V, CTL, Optmizer, and X-Vivo. The serum task force results demonstrate compellingly that serum-free media perform as well as qualified medium/serum combinations, independent of the applied SOP. Recovery and viability of cells are largely unaffected by serum-free conditions even after overnight resting. Furthermore, one serum-free medium was identified that appears to enhance antigen-specific IFNγ-secretion

Harmonisation of short-term in vitro culture for the expansion of antigen-specific CD8(+) T cells with detection by ELISPOT and HLA-multimer staining.

Ex vivo ELISPOT and multimer staining are well-established tests for the assessment of antigen-specific T cells. Many laboratories are now using a period of in vitro stimulation (IVS) to enhance detection. Here, we report the findings of a multi-centre panel organised by the Association for Cancer Immunotherapy Immunoguiding Program to investigate the impact of IVS protocols on the detection of antigen-specific T cells of varying ex vivo frequency. Five centres performed ELISPOT and multimer staining on centrally prepared PBMCs from 3 donors, both ex vivo and following IVS. A harmonised IVS protocol was designed based on the best-performing protocol(s), which was then evaluated in a second phase on 2 donors by 6 centres. All centres were able to reliably detect antigen-specific T cells of high/intermediate frequency both ex vivo (Phase I) and post-IVS (Phase I and II). The highest frequencies of antigen-specific T cells ex vivo were mirrored in the frequencies following IVS and in the detection rates. However, antigen-specific T cells of a low/undetectable frequency ex vivo were not reproducibly detected post-IVS. Harmonisation of the IVS protocol reduced the inter-laboratory variation observed for ELISPOT and multimer analyses by approximately 20 %. We further demonstrate that results from ELISPOT and multimer staining correlated after (P < 0.0001 and R (2) = 0.5113), but not before IVS. In summary, IVS was shown to be a reproducible method that benefitted from method harmonisation

Constraints on a Massive Dirac Neutrino Model

We examine constraints on a simple neutrino model in which there are three massless and three massive Dirac neutrinos and in which the left handed neutrinos are linear combinations of doublet and singlet neutrinos. We examine constraints from direct decays into heavy neutrinos, indirect effects on electroweak parameters, and flavor changing processes. We combine these constraints to examine the allowed mass range for the heavy neutrinos of each of the three generations.Comment: latex, 29 pages, 7 figures (not included), MIT-CTP-221

Minimal information about T cell assays: the process of reaching the community of T cell immunologists in cancer and beyond

Many assays to evaluate the nature, breadth, and quality of antigen-specific T cell responses are currently applied in human medicine. In most cases, assay-related protocols are developed on an individual laboratory basis, resulting in a large number of different protocols being applied worldwide. Together with the inherent complexity of cellular assays, this leads to unnecessary limitations in the ability to compare results generated across institutions. Over the past few years a number of critical assay parameters have been identified which influence test performance irrespective of protocol, material, and reagents used. Describing these critical factors as an integral part of any published report will both facilitate the comparison of data generated across institutions and lead to improvements in the assays themselves. To this end, the Minimal Information About T Cell Assays (MIATA) project was initiated. The objective of MIATA is to achieve a broad consensus on which T cell assay parameters should be reported in scientific publications and to propose a mechanism for reporting these in a systematic manner. To add maximum value for the scientific community, a step-wise, open, and field-spanning approach has been taken to achieve technical precision, user-friendliness, adequate incorporation of concerns, and high acceptance among peers. Here, we describe the past, present, and future perspectives of the MIATA project. We suggest that the approach taken can be generically applied to projects in which a broad consensus has to be reached among scientists working in fragmented fields, such as immunology. An additional objective of this undertaking is to engage the broader scientific community to comment on MIATA and to become an active participant in the project

Neuronal activity in medial superior temporal area (MST) during memory-based smooth pursuit eye movements in monkeys

We examined recently neuronal substrates for predictive pursuit using a memory-based smooth pursuit task that distinguishes the discharge related to memory of visual motion-direction from that related to movement preparation. We found that the supplementary eye fields (SEF) contain separate signals coding memory and assessment of visual motion-direction, decision not-to-pursue, and preparation for pursuit. Since medial superior temporal area (MST) is essential for visual motion processing and projects to SEF, we examined whether MST carried similar signals. We analyzed the discharge of 108 MSTd neurons responding to visual motion stimuli. The majority (69/108 = 64%) were also modulated during smooth pursuit. However, in nearly all (104/108 = 96%) of the MSTd neurons tested, there was no significant discharge modulation during the delay periods that required memory of visual motion-direction or preparation for smooth pursuit or not-to-pursue. Only 4 neurons of the 108 (4%) exhibited significantly higher discharge rates during the delay periods; however, their responses were non-directional and not instruction specific. Representative signals in the MSTd clearly differed from those in the SEF during memory-based smooth pursuit. MSTd neurons are unlikely to provide signals for memory of visual motion-direction or preparation for smooth pursuit eye movements